PubMed 30379827

PubMed ID: 30379827

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Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha.
Authors: Sugano Shigeo S, Nishihama Ryuichi, Shirakawa Makoto, Takagi Junpei, Matsuda Yoriko, Ishida Sakiko, Shimada Tomoo, Hara-Nishimura Ikuko, Osakabe Keishi, Kohchi Takayuki
Journal: PloS one (PLoS One), Vol.13(10), 2018

DOI: 10.1093/pcp/pcv182 PMCID: PMC4788410

Abstract
Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.
Publication Types
Journal Article Research Support, Non-U.S. Gov't
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