PubMed 34162328

PubMed ID: 34162328

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RNA sequencing reveals transcriptomic changes in tobacco (Nicotiana tabacum) following NtCPS2 knockdown.
Authors: He Lingxiao, Liu Huabing, Cheng Changhe, Xu Min, He Lei, Li Lihua, Yao Jian, Zhang Wenjun, Zhai Zhengguang, Luo Qinzhan, Sun Jutao, Yang Tiezhao, Xu Shixiao
Journal: BMC genomics (BMC Genomics), Vol.22(1), 2021‑Jun‑23

DOI: 10.1007/s00438-010-0511-1 PMCID: PMC3429483

Abstract
Amber-like compounds form in tobacco (Nicotiana tabacum) during leaf curing and impact aromatic quality. In particular, cis-abienol, a polycyclic labdane-related diterpenoid, is of research interest as a precursor of these compounds. Glandular trichome cells specifically express copalyl diphosphate synthase (NtCPS2) at high levels in tobacco, which, together with NtABS, are major regulators of cis-abienol biosynthesis in tobacco.

To identify the genes involved in the biosynthesis of cis-abienol in tobacco, we constructed transgenic tobacco lines based on an NtCPS2 gene-knockdown model using CRISPR/Cas9 genome-editing technology to inhibit NtCPS2 function in vitro. In mutant plants, cis-abienol and labdene diol contents decreased, whereas the gibberellin and abscisic acid (ABA) contents increased compared with those in wild-type tobacco plants. RNA sequencing analysis revealed the presence of 9514 differentially expressed genes (DEGs; 4279 upregulated, 5235 downregulated) when the leaves of wild-type and NtCPS2-knockdown tobacco plants were screened. Among these DEGs, the genes encoding cis-abienol synthase, ent-kaurene oxidase, auxin/ABA-related proteins, and transcription factors were found to be involved in various biological and physiochemical processes, including diterpenoid biosynthesis, plant hormone signal transduction, and plant-pathogen interactions.

The present study provides insight into the unique transcriptome profile of NtCPS2 knockdown tobacco, allowing for a better understanding of the biosynthesis of cis-abienol in tobacco.
Publication Types
Journal Article
Keywords
CRISPR-Cas9 Genome editing Labdanoid diterpenes Nicotiana tabacum RNASeq Terpenoids cis-Abienol
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